PDBsum entry 1gxd Go to PDB code:  Pore analysis for: 1gxd calculated with MOLE 2.0 PDB id 1gxd Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.58 2.20 30.6 -0.78 -0.20 23.5 84 4 5 1 4 0 0 0   2 2.77 2.89 35.9 -1.77 -0.61 15.0 84 2 3 3 2 1 1 0   3 2.77 2.90 43.0 -1.54 -0.49 11.9 77 2 3 4 2 3 1 2   4 1.71 2.91 54.0 -2.78 -0.63 29.3 78 4 5 1 2 1 5 0   5 1.49 1.50 63.6 -0.92 -0.25 8.4 73 5 2 4 4 5 4 0   6 1.77 3.27 77.0 -2.39 -0.64 21.9 81 6 6 5 3 0 5 0   7 1.48 1.60 87.9 -1.41 -0.37 11.7 78 7 3 5 3 4 4 0   8 1.30 1.29 91.8 -1.64 -0.46 19.8 81 6 5 5 4 3 2 0   9 2.49 3.52 25.3 -1.30 -0.54 7.4 82 1 3 3 2 1 1 0   10 2.98 3.16 28.8 -1.87 -0.55 16.7 82 2 3 2 4 0 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.