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PDBsum entry 1gtw

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 1gtw calculated with MOLE 2.0 PDB id
1gtw
Pores calculated on whole structure Pores calculated excluding ligands

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3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.15 2.21 124.0 -0.93 -0.51 10.8 84 6 0 3 3 0 0 0  DT 13 C DC 15 C DT 16 C DT 101 D DA 102 D DG 103
D DG 104 D DA 105 D DT 106 D DT 107 D
2 1.53 1.54 149.1 -1.92 -0.52 20.7 85 8 0 4 4 0 0 0  DA 1 C DA 2 C DT 3 C DG 4 C DT 5 C DG 6 C DT 107
D DG 108 D DC 114 D DA 115 D DT 116 D
3 1.52 1.55 153.6 -1.95 -0.52 22.0 85 8 1 3 5 0 0 0  DA 1 C DA 2 C DT 3 C DG 4 C DT 5 C DG 6 C DT 107
D DG 108 D DA 115 D DT 116 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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