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PDBsum entry 1gku

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Protein chain B PDB id
1gku
Protein chain B highlighted
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Jmol
Motifs
Secondary structure
Wiring diagram
Residue conservation
ProMotif
11 sheets
3 beta alpha beta units
10 beta hairpins
3 beta bulges
41 strands
42 helices
46 helix-helix interacs
73 beta turns
24 gamma turns
1 disulphide
Catalytic residues
D631-E512-H844-Y809
  
Chain (1011 residues)

UniProt code: O29238 (RGYR_ARCFU)   [Pfam]

structural classification (8 domains) :
Domain Links CATH no.   Class Architecture
1 2.20.20.30 = Mainly Beta Single Sheet
2 3.40.50.300 = Alpha Beta 3-Layer(aba) Sandwich
3 3.40.50.300 = Alpha Beta 3-Layer(aba) Sandwich
4 Unassigned = - -
5 3.40.50.140 = Alpha Beta 3-Layer(aba) Sandwich
6 1.10.460.10 = Mainly Alpha Orthogonal Bundle
7 Unassigned = - -
8 1.10.290.10 = Mainly Alpha Orthogonal Bundle

Key:  
Sec. struc: Helices labelled H1, H2, ... and strands by their sheets A, B, ...
  Helix Strand  
Motifs:   
    beta turn     gamma turn     beta hairpin
Disulphides:   
    disulphide bond
CSA annotation:   
    catalytic residue

Jmol
RasMol

FASTA
file
Domain 1
Topology diagram


Hera


Domain 2
Topology diagram


Hera


Domain 3
Topology diagram


Hera


Domain 4
Topology diagram


Hera


Domain 5
Topology diagram


Hera


Domain 6
Topology diagram


Hera


Domain 7
Topology diagram


Hera


Domain 8
Topology diagram


Hera


  Analysis of sequence's residue conservation
  Related protein sequences in the PDB
  
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