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PDBsum entry 1gku

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Tunnel analysis for: 1gku calculated with MOLE 2.0 PDB id
1gku
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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12 tunnels, coloured by tunnel radius 12 tunnels, coloured by tunnel radius 12 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.59 10.5 -1.99 -0.41 20.6 72 2 2 1 0 2 1 0  
2 1.27 6.6 -1.12 0.00 30.9 63 2 1 0 1 1 0 1  
3 1.27 12.6 -0.11 0.10 20.6 61 1 2 0 3 1 0 1  
4 2.27 5.5 -0.79 -0.58 15.9 85 1 1 0 1 0 0 0  
5 2.25 8.7 1.41 0.20 7.2 73 0 2 0 4 1 0 0  
6 1.59 10.9 -0.77 -0.44 13.2 76 2 0 0 1 1 0 0  
7 2.07 6.2 -0.75 0.07 13.7 72 1 1 0 1 1 0 0  
8 1.64 8.9 -0.64 -0.11 16.9 63 1 1 0 1 1 0 0  
9 1.92 5.2 0.06 0.21 5.3 81 1 0 0 3 1 1 0  
10 2.03 7.2 0.33 0.16 6.2 84 1 0 0 4 1 1 0  
11 1.33 9.8 0.75 0.71 15.1 73 1 1 1 2 3 0 0  
12 2.58 6.0 -0.55 0.65 12.4 67 1 1 0 1 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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