PDBsum entry 1gcj Go to PDB code:  Pore analysis for: 1gcj calculated with MOLE 2.0 PDB id 1gcj Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   24 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.05 3.32 25.6 1.08 0.62 1.6 58 0 0 0 4 6 0 0  MSE 219 B MSE 245 B MSE 252 B MSE 256 B 2 1.45 1.56 25.8 -2.23 -0.53 20.0 78 3 2 1 0 1 2 0   3 4.88 7.45 26.5 -1.93 -0.53 34.1 69 2 6 1 2 1 0 0   4 4.24 6.83 29.2 -3.22 -0.76 44.2 77 3 10 1 0 1 0 0   5 4.14 4.18 30.8 -0.74 -0.12 26.7 74 0 7 0 6 2 1 0  MSE 291 A MSE 291 B 6 1.30 1.30 32.1 -0.93 0.20 17.8 68 2 5 1 2 5 0 0  MSE 245 B MSE 252 B MSE 256 B 7 3.14 5.21 34.0 -2.50 -0.44 31.6 77 3 6 3 4 1 0 0   8 1.30 1.30 34.6 -0.31 0.07 14.5 72 2 5 1 4 4 0 0  MSE 219 B MSE 245 B MSE 252 B 9 3.13 5.18 35.0 -2.87 -0.67 39.7 79 3 9 3 1 1 0 0   10 3.18 6.03 35.2 -0.87 -0.06 25.3 75 0 9 2 7 2 0 0  MSE 291 A MSE 291 B 11 3.14 5.20 35.3 -2.02 -0.25 34.0 76 4 9 1 3 2 0 0   12 1.19 3.04 37.4 2.55 0.70 3.8 81 0 2 0 17 0 3 2  MSE 410 A MSE 410 B 13 1.27 1.27 38.5 -0.37 0.21 11.1 63 2 2 1 4 5 0 0  MSE 245 B MSE 252 B MSE 256 B 14 3.39 4.85 39.2 -2.14 -0.53 30.5 77 3 7 5 4 0 0 0   15 3.40 4.72 39.3 -1.46 -0.43 28.3 76 3 11 3 3 1 0 0   16 4.23 6.81 40.4 -1.93 -0.34 31.6 79 3 11 2 3 2 0 0   17 3.93 5.09 43.1 -1.70 -0.32 28.2 80 3 8 4 5 1 0 0   18 3.14 5.25 44.0 -1.87 -0.50 29.8 80 2 11 3 5 2 0 0   19 3.40 4.82 45.3 -1.92 -0.66 29.2 77 2 9 6 3 1 0 0   20 3.14 5.20 46.4 -1.58 -0.42 26.6 77 3 9 4 3 2 0 0   21 1.89 1.89 47.0 -1.27 -0.47 30.3 81 1 9 1 6 1 0 0  MSE 291 B 22 1.20 1.30 47.5 -0.91 -0.07 14.3 72 1 5 4 3 5 0 0  MSE 245 B MSE 252 B MSE 256 B 23 1.27 1.27 51.9 -1.33 -0.12 21.0 69 2 6 2 2 5 0 0  MSE 245 B MSE 252 B MSE 256 B 24 1.20 1.31 54.4 -0.38 -0.13 11.9 75 1 5 5 6 3 1 1  MSE 219 B MSE 245 B MSE 252 B 25 3.13 5.17 58.3 -1.65 -0.44 31.2 75 2 13 1 6 2 1 0  MSE 291 A 26 1.21 1.33 58.8 -0.76 0.02 16.1 72 0 7 2 4 6 1 0  MSE 245 B MSE 252 B MSE 256 B 27 3.93 5.10 59.3 -1.82 -0.50 31.8 76 2 11 3 7 1 1 0  MSE 291 A 28 1.37 2.93 62.6 0.39 0.25 15.0 81 3 4 3 12 1 1 1  MSE 417 A MSE 410 B 29 1.87 1.87 63.9 -1.62 -0.49 30.9 81 2 12 2 7 2 0 0  MSE 291 B 30 1.20 1.33 65.7 -0.45 -0.07 14.4 75 0 7 3 7 4 2 1  MSE 219 B MSE 245 B MSE 252 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.