 |
PDBsum entry 1gaj
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 1gaj calculated with  MOLE 2.0
|
PDB id
|
|
|
|
1gaj
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
2 tunnels,
coloured by tunnel radius |
|
4 tunnels,
coloured by
tunnel radius
|
4 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.26 |
1.26 |
16.5 |
-0.67 |
-0.25 |
15.1 |
82 |
|
2 |
2 |
1 |
3 |
0 |
1 |
0 |
|
|
 |
|
2 |
 |
1.26 |
1.26 |
19.5 |
-0.84 |
-0.21 |
15.3 |
84 |
1 |
1 |
2 |
4 |
0 |
1 |
0 |
|
|
3 |
 |
1.32 |
2.72 |
18.0 |
2.93 |
1.10 |
2.6 |
75 |
1 |
0 |
0 |
8 |
1 |
0 |
0 |
TBU 351 A TBU 353 A
|
 |
4 |
 |
1.16 |
1.62 |
20.5 |
2.17 |
0.58 |
4.2 |
70 |
1 |
1 |
1 |
11 |
0 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program