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PDBsum entry 1g9m

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 1g9m calculated with MOLE 2.0 PDB id
1g9m
Pores calculated on whole structure Pores calculated excluding ligands

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5 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.61 1.77 43.3 -2.07 -0.74 18.1 91 3 4 5 1 0 0 0  FUC 2 B NAG 776 G
2 1.25 2.96 109.1 -0.84 -0.12 15.9 78 3 7 6 6 3 3 1  NAG 762 G
3 1.32 1.48 109.2 -1.67 -0.57 21.3 81 6 6 4 3 1 3 0  NAG 886 G
4 2.42 3.49 26.5 0.07 0.16 5.1 70 1 0 1 3 1 3 0  
5 1.85 2.19 31.5 -0.24 -0.29 3.1 78 1 0 3 3 1 2 0  
6 2.53 3.69 34.1 -0.63 -0.31 6.2 74 2 1 1 4 0 4 0  
7 1.24 3.27 123.3 -1.62 -0.61 15.6 94 5 3 9 1 1 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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