spacer
spacer

PDBsum entry 1g2f

Go to PDB code: 
Top Page protein dna_rna metals tunnels links
Tunnel analysis for: 1g2f calculated with MOLE 2.0 PDB id
1g2f
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.29 1.58 19.5 -0.66 -0.46 9.7 88 3 0 2 1 1 0 0  DA 8 A DT 9 A DA 10 A DG 30 B
2 1.43 1.53 21.2 -1.30 -0.49 14.7 84 2 1 2 0 2 0 0  DA 10 A DA 11 A DC 20 B DT 21 B DT 22 B
3 1.47 1.48 24.0 -0.14 -0.17 10.4 77 1 0 1 2 1 1 0  DT 7 A DA 8 A DT 24 B DA 25 B
4 1.53 1.53 21.9 -0.33 -0.32 12.1 80 1 1 1 2 1 0 0  DT 57 D DA 58 D DT 73 E DT 74 E DA 75 E
5 1.48 1.59 20.6 -1.14 -0.41 11.8 84 2 1 2 0 2 0 0  DA 60 D DA 61 D DC 70 E DT 71 E DT 72 E
6 2.28 2.28 20.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  DA 58 D DT 59 D DA 60 D DA 61 D DT 76 E DA 77 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer