PDBsum entry 1fvv

Tunnel analysis for: 1fvv calculated with

MOLE 2.0

PDB id

1fvv

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

7 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.38

1.49

33.5

-1.51

-0.40

15.6

79

3

3

5

6

3

1

1

2

1.38

1.42

34.6

-0.99

-0.33

16.2

81

2

3

2

6

2

1

0

3

1.37

1.46

38.2

-1.16

-0.31

16.2

79

2

4

3

8

3

2

0

4

1.61

1.62

22.4

-1.15

-0.25

19.2

76

3

2

1

3

2

0

0

5

1.19

1.33

28.8

-0.48

-0.12

14.6

72

3

4

1

4

1

1

1

6

1.61

1.61

30.1

-1.18

-0.17

13.9

75

3

2

2

4

3

1

0

7

1.26

1.58

17.4

-0.32

-0.14

9.9

86

1

0

2

1

1

1

0

8

1.14

1.14

18.8

0.29

0.65

4.5

68

1

1

0

4

5

2

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.