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PDBsum entry 1fvv

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Transferase, cell cycle PDB id
1fvv
Contents
Protein chains
298 a.a. *
260 a.a. *
Ligands
107 ×2
Waters ×129
* Residue conservation analysis

References listed in PDB file
Key reference
Title Prevention of chemotherapy-Induced alopecia in rats by cdk inhibitors.
Authors S.T.Davis, B.G.Benson, H.N.Bramson, D.E.Chapman, S.H.Dickerson, K.M.Dold, D.J.Eberwein, M.Edelstein, S.V.Frye, R.T.Gampe jr, R.J.Griffin, P.A.Harris, A.M.Hassell, W.D.Holmes, R.N.Hunter, V.B.Knick, K.Lackey, B.Lovejoy, M.J.Luzzio, D.Murray, P.Parker, W.J.Rocque, L.Shewchuk, J.M.Veal, D.H.Walker, L.F.Kuyper.
Ref. Science, 2001, 291, 134-137. [DOI no: 10.1126/science.291.5501.134]
PubMed id 11141566
Abstract
Most traditional cytotoxic anticancer agents ablate the rapidly dividing epithelium of the hair follicle and induce alopecia (hair loss). Inhibition of cyclin-dependent kinase 2 (CDK2), a positive regulator of eukaryotic cell cycle progression, may represent a therapeutic strategy for prevention of chemotherapy-induced alopecia (CIA) by arresting the cell cycle and reducing the sensitivity of the epithelium to many cell cycle-active antitumor agents. Potent small-molecule inhibitors of CDK2 were developed using structure-based methods. Topical application of these compounds in a neonatal rat model of CIA reduced hair loss at the site of application in 33 to 50% of the animals. Thus, inhibition of CDK2 represents a potentially useful approach for the prevention of CIA in cancer patients.
Figure 1.
Fig. 1. (A) Chemical structures of compounds 1 to 4. (B) X-ray crystallographic structure of CDK2 in complex with compound 3 (15). Atoms are color-coded as follows: protein carbon atoms, green; nitrogen, blue; oxygen, red; sulfur, yellow; and bromine, purple. The carbon atoms of compound 3 are shown in orange. The indolinone (or oxindole) moiety of compound 3 was bound at the back of the ATP site in a manner similar to that found for members of the related series 2 in complex with fibroblast growth factor (FGF) kinase (31). The oxindole amide group of 3 interacted with the strand of protein that connects the two domains of CDK2, donating a hydrogen bond to the backbone carbonyl of Glu81 and accepting a hydrogen bond from the backbone NH of Leu83. The sulfonamidophenylhydrazone group projected toward the opening of the cleft, with the sulfonamide interacting with Asp86. The backbone NH of Asp86 donated a hydrogen bond to one of the sulfonamide oxygen atoms, and the side-chain carboxyl group accepted a hydrogen bond from the sulfonamide amine function. (C) X-ray crystallographic structure of compound 4 bound to CDK2-cyclin A. The carbon atoms of compound 4 are shown in pink. The thiazole nitrogen atom at position 5 of compound 4 accepted a hydrogen bond from Lys33, and the thiazole sulfur atom at position 4 provided hydrophobic interactions with Val18. The pyridyl substituent on the sulfonamide group projected into solvent.
Figure 4.
Fig. 4. Compound 4 prevents hair loss in a neonatal rat model of CIA. Rat pups (13 days of age, actively growing hair) were pretreated 4 hours and 2 hours (t = 4 and 2 hours) with topical application of compound 4 (250 µg; 50 µl of 5 mg/ml DMSO) to the scalp, then injected with etoposide. Etoposide induced total alopecia within 1 week of administration. Hair was assessed and photographed on day 21. The protective activity was schedule dependent. Two applications, 4 hours and 2 hours before etoposide, were optimal for protection. Post-treatment schedules were ineffective in preventing hair loss. Shown are two animals from the untreated group (- etoposide, upper left panel, animals 1 and 2); two animals from DMSO-treated group (+ etoposide, upper right, animals 3 and 4), and five animals from compound 4-treated group (+ etoposide, lower panel, animals 5 to 9). Experiments were repeated at least nine times with five rats per experimental subgroup.
The above figures are reprinted by permission from the AAAs: Science (2001, 291, 134-137) copyright 2001.
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