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PDBsum entry 1fgy

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Signaling protein PDB id
1fgy
Contents
Protein chain
127 a.a. *
Ligands
4IP
Waters ×136
* Residue conservation analysis

References listed in PDB file
Key reference
Title Structural basis of 3-Phosphoinositide recognition by pleckstrin homology domains.
Authors S.E.Lietzke, S.Bose, T.Cronin, J.Klarlund, A.Chawla, M.P.Czech, D.G.Lambright.
Ref. Mol Cell, 2000, 6, 385-394. [DOI no: 10.1016/S1097-2765(00)00038-1]
PubMed id 10983985
Abstract
Lipid second messengers generated by phosphoinositide (PI) 3-kinases regulate diverse cellular functions through interaction with pleckstrin homology (PH) domains in modular signaling proteins. The PH domain of Grp1, a PI 3-kinase-activated exchange factor for Arf GTPases, selectively binds phosphatidylinositol 3,4,5-trisphosphate with high affinity. We have determined the structure of the Grp1 PH domain in the unliganded form and bound to inositol 1,3,4,5-tetraphosphate. A novel mode of phosphoinositide recognition involving a 20-residue insertion within the beta6/beta7 loop explains the unusually high specificity of the Grp1 PH domain and the promiscuous 3-phosphoinositide binding typical of several PH domains including that of protein kinase B. When compared to other PH domains, general determinants of 3-phosphoinositide recognition and specificity can be deduced.
Figure 5.
Figure 5. Localized Structural Changes Accompanying Head Group BindingOverlay of the unliganded (magenta) and Ins(1,3,4,5)P[4]-bound (cyan) forms of the Grp1 PH domain following superposition of Cα atoms.
Figure 6.
Figure 6. Comparison of Ins(1,3,4,5)P[4] Recognition by the Grp1 and Btk PH Domains(A) Space-filling representation with invariant residues of the signature motif shown in white and nonconserved residues from the three SDRs highlighted in green (β1/β2 loop), magenta (β3/β4 loop), and orange (hairpin insertion).(B) Schematic diagram showing direct interactions with the head group. Residues in the signature motif are indicated in blue.
The above figures are reprinted by permission from Cell Press: Mol Cell (2000, 6, 385-394) copyright 2000.
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