PDBsum entry 1f3f Go to PDB code:  Tunnel analysis for: 1f3f calculated with MOLE 2.0 PDB id 1f3f Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.23 20.5 -1.14 0.15 20.1 75 3 3 0 4 2 1 0  D4T 160 A MG 165 A 2 1.31 1.31 22.5 -1.28 0.27 19.8 78 5 1 0 4 2 1 0  D4T 160 A MG 165 A 3 1.23 1.24 29.2 -1.15 0.18 19.7 77 2 3 1 4 2 1 0  D4T 160 A 4 1.24 1.24 19.3 -0.73 0.38 18.2 82 5 1 0 3 2 0 0  D4T 161 B PO4 162 B MG 166 B 5 1.21 1.21 23.7 -0.89 0.35 18.7 79 6 0 0 3 3 0 0  D4T 161 B PO4 162 B MG 166 B 6 1.20 1.21 26.6 -1.32 0.33 19.4 76 6 0 0 4 3 1 0  D4T 161 B PO4 162 B MG 166 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.