spacer
spacer

PDBsum entry 1f1h

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 1f1h calculated with MOLE 2.0 PDB id
1f1h
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.68 3.73 28.3 -2.05 -0.46 25.1 86 5 2 3 1 2 0 0  
2 3.93 4.04 35.9 -2.20 -0.21 22.6 71 3 6 1 1 4 3 0  
3 3.88 4.01 40.5 -1.80 -0.02 21.0 70 4 7 1 1 5 3 0  
4 2.51 2.67 42.6 -2.20 -0.55 24.2 88 8 1 7 0 3 0 0  
5 3.36 3.91 43.2 -0.33 0.13 13.2 82 6 1 5 2 5 0 0  
6 3.66 3.74 47.6 -1.56 -0.61 15.2 87 4 4 8 1 4 0 0  
7 1.89 4.51 48.6 -2.39 -0.57 33.6 84 9 9 5 5 2 0 0  MN 469 E ADP 1475 E
8 1.84 4.61 48.8 -2.37 -0.56 33.9 84 10 9 5 4 2 0 0  MN 469 I ADP 1479 I
9 2.53 2.69 51.2 -1.11 -0.05 19.4 83 8 1 5 2 5 0 0  
10 3.94 4.06 51.7 -2.47 -0.33 25.0 72 4 7 2 2 4 3 0  
11 3.42 3.96 56.2 -0.54 -0.08 11.7 83 4 4 6 3 6 0 0  
12 3.93 4.02 57.4 -2.07 -0.14 22.7 71 5 8 2 2 5 3 0  
13 2.65 4.34 58.3 -2.14 -0.41 26.9 86 6 4 6 3 4 0 0  
14 2.66 4.31 59.0 -1.98 -0.50 23.5 90 11 2 9 2 3 0 0  
15 2.63 4.11 60.7 -0.65 -0.18 12.7 89 7 1 10 5 6 0 0  
16 3.31 3.88 66.8 -1.11 -0.05 16.9 80 8 6 6 4 6 3 0  
17 2.71 3.75 70.2 -0.93 0.00 15.4 80 7 6 6 4 6 3 0  
18 3.35 3.89 76.4 -0.91 -0.23 15.4 83 5 6 6 2 6 0 0  
19 3.66 3.74 77.9 -1.82 -0.63 19.6 87 5 6 8 1 4 0 0  
20 3.37 3.93 78.5 -1.12 -0.13 15.9 80 6 7 7 4 7 3 0  
21 3.91 4.04 79.3 -2.22 -0.24 22.7 72 6 13 3 3 6 6 0  
22 3.33 3.89 79.2 -0.84 -0.12 15.7 82 5 4 6 3 6 0 0  
23 1.86 4.44 83.7 -2.44 -0.44 27.1 79 10 13 4 6 2 4 0  MN 469 I TL 474 I ADP 1479 I
24 3.37 3.97 91.9 -1.22 -0.23 16.4 79 6 8 8 5 8 3 0  
25 2.61 3.91 99.9 -1.29 -0.20 17.4 84 9 7 12 6 7 3 0  
26 2.67 3.73 108.8 -1.22 -0.36 17.0 85 11 6 12 4 9 0 0  
27 3.47 5.04 112.9 -1.54 -0.22 20.6 82 10 10 10 4 7 3 0  
28 3.78 4.01 127.3 -2.29 -0.27 23.5 71 9 18 3 5 10 9 0  
29 3.35 3.95 128.3 -1.39 -0.26 19.6 79 7 12 7 4 8 3 0  
30 2.56 3.95 131.4 -1.40 -0.30 18.5 84 12 11 13 5 9 3 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer