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PDBsum entry 1ezv

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 1ezv calculated with MOLE 2.0 PDB id
1ezv
Pores calculated on whole structure Pores calculated excluding ligands

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14 pores, coloured by radius 22 pores, coloured by radius 22 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.36 1.36 32.4 -0.36 -0.09 11.7 79 4 1 2 6 3 1 0  SMA 505 C
2 2.41 2.83 41.9 2.00 0.48 1.2 89 0 0 3 13 1 0 0  UQ6 506 C
3 1.68 1.83 43.6 -1.71 -0.42 18.9 76 2 5 2 2 1 3 0  
4 2.61 3.78 43.8 -1.09 0.00 18.9 81 5 2 4 3 1 4 0  HEM 3 D
5 2.42 2.85 49.3 1.32 0.45 5.3 85 3 0 2 12 3 0 0  
6 1.31 2.05 65.1 0.60 0.18 7.6 86 4 1 2 15 4 1 0  HEM 401 C HEM 402 C SMA 505 C UQ6 506 C
7 1.46 2.02 67.1 -0.38 -0.03 12.5 81 3 3 9 12 4 0 0  
8 1.15 1.34 68.4 -0.43 -0.03 16.8 74 5 5 1 11 4 4 1  HEM 3 D
9 1.16 1.36 70.3 -0.49 0.05 18.4 78 9 3 2 10 2 4 1  HEM 3 D
10 1.32 2.96 79.0 0.88 0.60 8.2 79 6 0 5 20 6 0 0  HEM 402 C UQ6 506 C
11 1.91 3.34 89.3 -1.26 -0.15 17.9 79 7 6 9 9 4 2 0  
12 1.46 2.02 95.7 -0.55 -0.01 11.8 78 8 4 11 13 5 2 0  
13 1.16 2.59 99.4 -0.53 -0.12 17.9 80 8 6 2 13 2 5 1  HEM 3 D
14 1.39 1.37 132.2 -0.24 0.21 10.6 78 8 4 6 17 10 4 0  SMA 505 C
15 1.60 1.89 151.9 -1.70 -0.41 16.1 80 8 6 11 10 3 6 0  
16 2.04 3.03 164.0 -1.07 0.02 17.7 79 16 5 7 15 8 3 0  
17 1.43 1.85 165.0 -2.08 -0.48 22.1 82 10 9 15 10 3 4 0  
18 1.55 1.91 203.6 -1.00 -0.07 14.5 80 15 6 13 19 9 4 0  
19 1.50 1.93 205.6 -1.64 -0.36 20.1 81 15 10 14 16 3 4 0  
20 1.46 2.08 210.4 -0.81 -0.02 15.2 80 16 8 15 23 9 2 0  
21 1.41 1.31 256.0 -1.17 -0.17 17.5 81 16 12 16 24 11 4 0  SMA 505 C
22 1.31 2.84 264.1 -0.97 -0.05 17.6 80 18 12 18 26 13 3 0  HEM 402 C UQ6 506 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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