Literature references that cite this PDB file's
key reference
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PubMed id
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Reference
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M.G.Ding,
J.P.di Rago,
and
B.L.Trumpower
(2009).
Combining Inhibitor Resistance-conferring Mutations in Cytochrome b Creates Conditional Synthetic Lethality in Saccharomyces cerevisiae.
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J Biol Chem, 284,
8478-8485.
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M.Sarewicz,
M.Dutka,
W.Froncisz,
and
A.Osyczka
(2009).
Magnetic interactions sense changes in distance between heme b(L) and the iron-sulfur cluster in cytochrome bc(1).
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Biochemistry, 48,
5708-5720.
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R.Covian,
and
B.L.Trumpower
(2009).
Ilicicolin Inhibition and Binding at Center N of the Dimeric Cytochrome bc1 Complex Reveal Electron Transfer and Regulatory Interactions between Monomers.
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J Biol Chem, 284,
8614-8620.
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R.Covian,
and
B.L.Trumpower
(2009).
The Rate-limiting Step in the Cytochrome bc1 Complex (Ubiquinol-Cytochrome c Oxidoreductase) Is Not Changed by Inhibition of Cytochrome b-dependent Deprotonation: IMPLICATIONS FOR THE MECHANISM OF UBIQUINOL OXIDATION AT CENTER P OF THE bc1 COMPLEX.
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J Biol Chem, 284,
14359-14367.
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R.Pardossi-Piquard,
S.P.Yang,
S.Kanemoto,
Y.Gu,
F.Chen,
C.Böhm,
J.Sevalle,
T.Li,
P.C.Wong,
F.Checler,
G.Schmitt-Ulms,
P.St George-Hyslop,
and
P.E.Fraser
(2009).
APH1 Polar Transmembrane Residues Regulate the Assembly and Activity of Presenilin Complexes.
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J Biol Chem, 284,
16298-16307.
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S.Carmi,
E.Y.Levanon,
and
E.Eisenberg
(2009).
Efficiency of complex production in changing environment.
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BMC Syst Biol, 3,
3.
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V.Zara,
L.Conte,
and
B.L.Trumpower
(2009).
Evidence that the assembly of the yeast cytochrome bc1 complex involves the formation of a large core structure in the inner mitochondrial membrane.
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FEBS J, 276,
1900-1914.
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W.A.Beckstead,
M.T.Ebbert,
M.J.Rowe,
and
D.A.McClellan
(2009).
Evolutionary pressure on mitochondrial cytochrome b is consistent with a role of CytbI7T affecting longevity during caloric restriction.
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PLoS One, 4,
e5836.
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B.Gurung,
L.Yu,
and
C.A.Yu
(2008).
Stigmatellin Induces Reduction of Iron-Sulfur Protein in the Oxidized Cytochrome bc1 Complex.
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J Biol Chem, 283,
28087-28094.
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D.Xia,
L.Esser,
M.Elberry,
F.Zhou,
L.Yu,
and
C.A.Yu
(2008).
The road to the crystal structure of the cytochrome bc (1) complex from the anoxigenic, photosynthetic bacterium Rhodobacter sphaeroides.
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J Bioenerg Biomembr, 40,
485-492.
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E.A.Berry,
and
F.A.Walker
(2008).
Bis-histidine-coordinated hemes in four-helix bundles: how the geometry of the bundle controls the axial imidazole plane orientations in transmembrane cytochromes of mitochondrial complexes II and III and related proteins.
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J Biol Inorg Chem, 13,
481-498.
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E.P.Carpenter,
K.Beis,
A.D.Cameron,
and
S.Iwata
(2008).
Overcoming the challenges of membrane protein crystallography.
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Curr Opin Struct Biol, 18,
581-586.
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N.Fisher,
and
B.Meunier
(2008).
Molecular basis of resistance to cytochrome bc1 inhibitors.
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FEMS Yeast Res, 8,
183-192.
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P.Lukat,
M.Hoffmann,
and
O.Einsle
(2008).
Crystal packing of the c(6)-type cytochrome OmcF from Geobacter sulfurreducens is mediated by an N-terminal Strep-tag II.
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Acta Crystallogr D Biol Crystallogr, 64,
919-926.
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PDB code:
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S.L.Cuddihy,
S.S.Ali,
E.S.Musiek,
J.Lucero,
S.J.Kopp,
J.D.Morrow,
and
L.L.Dugan
(2008).
Prolonged alpha-tocopherol deficiency decreases oxidative stress and unmasks alpha-tocopherol-dependent regulation of mitochondrial function in the brain.
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J Biol Chem, 283,
6915-6924.
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T.Kleinschroth,
O.Anderka,
M.Ritter,
A.Stocker,
T.A.Link,
B.Ludwig,
and
P.Hellwig
(2008).
Characterization of mutations in crucial residues around the Q(o) binding site of the cytochrome bc complex from Paracoccus denitrificans.
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FEBS J, 275,
4773-4785.
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V.Tereshko,
S.Uysal,
A.Koide,
K.Margalef,
S.Koide,
and
A.A.Kossiakoff
(2008).
Toward chaperone-assisted crystallography: protein engineering enhancement of crystal packing and X-ray phasing capabilities of a camelid single-domain antibody (VHH) scaffold.
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Protein Sci, 17,
1175-1187.
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PDB codes:
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A.Y.Mulkidjanian
(2007).
Proton translocation by the cytochrome bc1 complexes of phototrophic bacteria: introducing the activated Q-cycle.
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Photochem Photobiol Sci, 6,
19-34.
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B.N.Hudder,
J.G.Morales,
A.Stubna,
E.Münck,
M.P.Hendrich,
and
P.A.Lindahl
(2007).
Electron paramagnetic resonance and Mössbauer spectroscopy of intact mitochondria from respiring Saccharomyces cerevisiae.
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J Biol Inorg Chem, 12,
1029-1053.
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D.Xia,
L.Esser,
L.Yu,
and
C.A.Yu
(2007).
Structural basis for the mechanism of electron bifurcation at the quinol oxidation site of the cytochrome bc1 complex.
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Photosynth Res, 92,
17-34.
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G.D.Fairn,
K.Macdonald,
and
C.R.McMaster
(2007).
A chemogenomic screen in Saccharomyces cerevisiae uncovers a primary role for the mitochondria in farnesol toxicity and its regulation by the Pkc1 pathway.
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J Biol Chem, 282,
4868-4874.
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L.Giachini,
F.Francia,
G.Veronesi,
D.W.Lee,
F.Daldal,
L.S.Huang,
E.A.Berry,
T.Cocco,
S.Papa,
F.Boscherini,
and
G.Venturoli
(2007).
X-Ray absorption studies of Zn2+ binding sites in bacterial, avian, and bovine cytochrome bc1 complexes.
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Biophys J, 93,
2934-2951.
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N.Buzhynskyy,
P.Sens,
V.Prima,
J.N.Sturgis,
and
S.Scheuring
(2007).
Rows of ATP synthase dimers in native mitochondrial inner membranes.
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Biophys J, 93,
2870-2876.
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R.Covian,
T.Kleinschroth,
B.Ludwig,
and
B.L.Trumpower
(2007).
Asymmetric binding of stigmatellin to the dimeric Paracoccus denitrificans bc1 complex: evidence for anti-cooperative ubiquinol oxidation and communication between center P ubiquinol oxidation sites.
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J Biol Chem, 282,
22289-22297.
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S.A.Dikanov,
J.T.Holland,
B.Endeward,
D.R.Kolling,
R.I.Samoilova,
T.F.Prisner,
and
A.R.Crofts
(2007).
Hydrogen bonds between nitrogen donors and the semiquinone in the Qi-site of the bc1 complex.
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J Biol Chem, 282,
25831-25841.
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S.Nauli,
S.Farr,
Y.J.Lee,
H.Y.Kim,
S.Faham,
and
J.U.Bowie
(2007).
Polymer-driven crystallization.
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Protein Sci, 16,
2542-2551.
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PDB codes:
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T.Wenz,
R.Covian,
P.Hellwig,
F.Macmillan,
B.Meunier,
B.L.Trumpower,
and
C.Hunte
(2007).
Mutational analysis of cytochrome b at the ubiquinol oxidation site of yeast complex III.
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J Biol Chem, 282,
3977-3988.
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V.Zara,
L.Conte,
and
B.L.Trumpower
(2007).
Identification and characterization of cytochrome bc(1) subcomplexes in mitochondria from yeast with single and double deletions of genes encoding cytochrome bc(1) subunits.
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FEBS J, 274,
4526-4539.
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X.Liang,
D.J.Campopiano,
and
P.J.Sadler
(2007).
Metals in membranes.
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Chem Soc Rev, 36,
968-992.
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E.Maklashina,
P.Hellwig,
R.A.Rothery,
V.Kotlyar,
Y.Sher,
J.H.Weiner,
and
G.Cecchini
(2006).
Differences in protonation of ubiquinone and menaquinone in fumarate reductase from Escherichia coli.
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J Biol Chem, 281,
26655-26664.
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E.Schäfer,
H.Seelert,
N.H.Reifschneider,
F.Krause,
N.A.Dencher,
and
J.Vonck
(2006).
Architecture of active mammalian respiratory chain supercomplexes.
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J Biol Chem, 281,
15370-15375.
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F.A.Walker
(2006).
The heme environment of mouse neuroglobin: histidine imidazole plane orientations obtained from solution NMR and EPR spectroscopy as compared with X-ray crystallography.
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J Biol Inorg Chem, 11,
391-397.
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J.P.Hosler,
S.Ferguson-Miller,
and
D.A.Mills
(2006).
Energy transduction: proton transfer through the respiratory complexes.
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Annu Rev Biochem, 75,
165-187.
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M.G.Ding,
J.P.di Rago,
and
B.L.Trumpower
(2006).
Investigating the Qn site of the cytochrome bc1 complex in Saccharomyces cerevisiae with mutants resistant to ilicicolin H, a novel Qn site inhibitor.
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J Biol Chem, 281,
36036-36043.
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R.Covian,
and
B.L.Trumpower
(2006).
Regulatory interactions between ubiquinol oxidation and ubiquinone reduction sites in the dimeric cytochrome bc1 complex.
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J Biol Chem, 281,
30925-30932.
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R.Horsefield,
V.Yankovskaya,
G.Sexton,
W.Whittingham,
K.Shiomi,
S.Omura,
B.Byrne,
G.Cecchini,
and
S.Iwata
(2006).
Structural and computational analysis of the quinone-binding site of complex II (succinate-ubiquinone oxidoreductase): a mechanism of electron transfer and proton conduction during ubiquinone reduction.
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J Biol Chem, 281,
7309-7316.
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PDB codes:
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T.P.Roosild,
S.Castronovo,
and
S.Choe
(2006).
Structure of anti-FLAG M2 Fab domain and its use in the stabilization of engineered membrane proteins.
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Acta Crystallogr Sect F Struct Biol Cryst Commun, 62,
835-839.
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PDB code:
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W.A.Cramer,
H.Zhang,
J.Yan,
G.Kurisu,
and
J.L.Smith
(2006).
Transmembrane traffic in the cytochrome b6f complex.
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Annu Rev Biochem, 75,
769-790.
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Y.Matoba,
T.Kumagai,
A.Yamamoto,
H.Yoshitsu,
and
M.Sugiyama
(2006).
Crystallographic evidence that the dinuclear copper center of tyrosinase is flexible during catalysis.
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J Biol Chem, 281,
8981-8990.
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PDB codes:
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B.Gurung,
L.Yu,
D.Xia,
and
C.A.Yu
(2005).
The iron-sulfur cluster of the Rieske iron-sulfur protein functions as a proton-exiting gate in the cytochrome bc(1) complex.
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J Biol Chem, 280,
24895-24902.
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B.Marbois,
P.Gin,
K.F.Faull,
W.W.Poon,
P.T.Lee,
J.Strahan,
J.N.Shepherd,
and
C.F.Clarke
(2005).
Coq3 and Coq4 define a polypeptide complex in yeast mitochondria for the biosynthesis of coenzyme Q.
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J Biol Chem, 280,
20231-20238.
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E.Mileykovskaya,
M.Zhang,
and
W.Dowhan
(2005).
Cardiolipin in energy transducing membranes.
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Biochemistry (Mosc), 70,
154-158.
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F.Musiani,
A.Dikiy,
A.Y.Semenov,
and
S.Ciurli
(2005).
Structure of the intermolecular complex between plastocyanin and cytochrome f from spinach.
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J Biol Chem, 280,
18833-18841.
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PDB code:
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H.Zhang,
and
W.A.Cramer
(2005).
Problems in obtaining diffraction-quality crystals of hetero-oligomeric integral membrane proteins.
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J Struct Funct Genomics, 6,
219-223.
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M.E.Nelson,
G.Finazzi,
Q.J.Wang,
K.A.Middleton-Zarka,
J.Whitmarsh,
and
T.Kallas
(2005).
Cytochrome b6 arginine 214 of Synechococcus sp. PCC 7002, a key residue for quinone-reductase site function and turnover of the cytochrome bf complex.
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J Biol Chem, 280,
10395-10402.
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M.G.Bertero,
R.A.Rothery,
N.Boroumand,
M.Palak,
F.Blasco,
N.Ginet,
J.H.Weiner,
and
N.C.Strynadka
(2005).
Structural and biochemical characterization of a quinol binding site of Escherichia coli nitrate reductase A.
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J Biol Chem, 280,
14836-14843.
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PDB codes:
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M.W.Mather,
E.Darrouzet,
M.Valkova-Valchanova,
J.W.Cooley,
M.T.McIntosh,
F.Daldal,
and
A.B.Vaidya
(2005).
Uncovering the molecular mode of action of the antimalarial drug atovaquone using a bacterial system.
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J Biol Chem, 280,
27458-27465.
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R.Covian,
and
B.L.Trumpower
(2005).
Rapid electron transfer between monomers when the cytochrome bc1 complex dimer is reduced through center N.
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J Biol Chem, 280,
22732-22740.
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R.W.Woody
(2005).
Heme-heme interactions in tetramers and dimers of hemoglobin subunits: DeVoe theory calculations.
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Chirality, 17,
450-455.
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X.Gong,
L.Yu,
D.Xia,
and
C.A.Yu
(2005).
Evidence for electron equilibrium between the two hemes bL in the dimeric cytochrome bc1 complex.
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J Biol Chem, 280,
9251-9257.
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Z.Y.Guo,
S.Lin,
J.A.Heinen,
C.C.Chang,
and
T.Y.Chang
(2005).
The active site His-460 of human acyl-coenzyme A:cholesterol acyltransferase 1 resides in a hitherto undisclosed transmembrane domain.
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J Biol Chem, 280,
37814-37826.
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A.Osyczka,
C.C.Moser,
F.Daldal,
and
P.L.Dutton
(2004).
Reversible redox energy coupling in electron transfer chains.
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Nature, 427,
607-612.
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A.R.Crofts
(2004).
The cytochrome bc1 complex: function in the context of structure.
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Annu Rev Physiol, 66,
689-733.
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A.Stroh,
O.Anderka,
K.Pfeiffer,
T.Yagi,
M.Finel,
B.Ludwig,
and
H.Schägger
(2004).
Assembly of respiratory complexes I, III, and IV into NADH oxidase supercomplex stabilizes complex I in Paracoccus denitrificans.
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| |
J Biol Chem, 279,
5000-5007.
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C.de Vitry,
Y.Ouyang,
G.Finazzi,
F.A.Wollman,
and
T.Kallas
(2004).
The chloroplast Rieske iron-sulfur protein. At the crossroad of electron transport and signal transduction.
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| |
J Biol Chem, 279,
44621-44627.
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E.B.Gutierrez-Cirlos,
T.Merbitz-Zahradnik,
and
B.L.Trumpower
(2004).
Inhibition of the yeast cytochrome bc1 complex by ilicicolin H, a novel inhibitor that acts at the Qn site of the bc1 complex.
|
| |
J Biol Chem, 279,
8708-8714.
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F.L.Muller,
Y.Liu,
and
H.Van Remmen
(2004).
Complex III releases superoxide to both sides of the inner mitochondrial membrane.
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| |
J Biol Chem, 279,
49064-49073.
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G.Brasseur,
D.Lemesle-Meunier,
F.Reinaud,
and
B.Meunier
(2004).
QO site deficiency can be compensated by extragenic mutations in the hinge region of the iron-sulfur protein in the bc1 complex of Saccharomyces cerevisiae.
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| |
J Biol Chem, 279,
24203-24211.
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J.J.Kessl,
P.Hill,
B.B.Lange,
S.R.Meshnick,
B.Meunier,
and
B.L.Trumpower
(2004).
Molecular basis for atovaquone resistance in Pneumocystis jirovecii modeled in the cytochrome bc(1) complex of Saccharomyces cerevisiae.
|
| |
J Biol Chem, 279,
2817-2824.
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J.M.Herrmann,
and
N.Bonnefoy
(2004).
Protein export across the inner membrane of mitochondria: the nature of translocated domains determines the dependence on the Oxa1 translocase.
|
| |
J Biol Chem, 279,
2507-2512.
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M.Fabian,
D.Jancura,
and
G.Palmer
(2004).
Two sites of interaction of anions with cytochrome a in oxidized bovine cytochrome c oxidase.
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| |
J Biol Chem, 279,
16170-16177.
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M.Gimpelev,
L.R.Forrest,
D.Murray,
and
B.Honig
(2004).
Helical packing patterns in membrane and soluble proteins.
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| |
Biophys J, 87,
4075-4086.
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N.Fisher,
A.C.Brown,
G.Sexton,
A.Cook,
J.Windass,
and
B.Meunier
(2004).
Modeling the Qo site of crop pathogens in Saccharomyces cerevisiae cytochrome b.
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| |
Eur J Biochem, 271,
2264-2271.
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N.Fisher,
C.K.Castleden,
I.Bourges,
G.Brasseur,
G.Dujardin,
and
B.Meunier
(2004).
Human disease-related mutations in cytochrome b studied in yeast.
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| |
J Biol Chem, 279,
12951-12958.
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N.Nelson,
and
A.Ben-Shem
(2004).
The complex architecture of oxygenic photosynthesis.
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| |
Nat Rev Mol Cell Biol, 5,
971-982.
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R.Covian,
E.B.Gutierrez-Cirlos,
and
B.L.Trumpower
(2004).
Anti-cooperative oxidation of ubiquinol by the yeast cytochrome bc1 complex.
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| |
J Biol Chem, 279,
15040-15049.
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V.Zara,
I.Palmisano,
L.Conte,
and
B.L.Trumpower
(2004).
Further insights into the assembly of the yeast cytochrome bc1 complex based on analysis of single and double deletion mutants lacking supernumerary subunits and cytochrome b.
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| |
Eur J Biochem, 271,
1209-1218.
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D.R.Kolling,
R.I.Samoilova,
J.T.Holland,
E.A.Berry,
S.A.Dikanov,
and
A.R.Crofts
(2003).
Exploration of ligands to the Qi site semiquinone in the bc1 complex using high-resolution EPR.
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| |
J Biol Chem, 278,
39747-39754.
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G.Kurisu,
H.Zhang,
J.L.Smith,
and
W.A.Cramer
(2003).
Structure of the cytochrome b6f complex of oxygenic photosynthesis: tuning the cavity.
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| |
Science, 302,
1009-1014.
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PDB codes:
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H.Palsdottir,
C.G.Lojero,
B.L.Trumpower,
and
C.Hunte
(2003).
Structure of the yeast cytochrome bc1 complex with a hydroxyquinone anion Qo site inhibitor bound.
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| |
J Biol Chem, 278,
31303-31311.
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PDB code:
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PDB code:
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PDB code:
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|
The most recent references are shown first.
Citation data come partly from CiteXplore and partly
from an automated harvesting procedure. Note that this is likely to be
only a partial list as not all journals are covered by
either method. However, we are continually building up the citation data
so more and more references will be included with time.
Where a reference describes a PDB structure, the PDB
code is
shown on the right.
|
430 a.a.
352 a.a.
385 a.a.
245 a.a.
185 a.a.
74 a.a.
125 a.a.
93 a.a.
55 a.a.
127 a.a.
107 a.a.
