spacer
spacer

PDBsum entry 1epf

Go to PDB code: 
Top Page protein metals Protein-protein interface(s) pores links
Pore analysis for: 1epf calculated with MOLE 2.0 PDB id
1epf
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.02 4.74 29.0 -2.13 -0.62 27.8 81 5 6 4 1 2 0 0  
2 2.12 3.90 38.2 -1.51 -0.43 15.1 89 4 2 4 2 0 0 0  
3 2.00 4.63 47.8 -2.08 -0.56 29.7 85 7 6 6 3 1 0 0  
4 2.81 3.77 52.1 -1.28 -0.39 14.6 81 4 2 4 4 1 1 0  
5 1.99 2.03 54.6 -1.92 -0.56 19.9 81 6 7 7 1 3 1 0  
6 1.85 2.11 57.3 -1.69 -0.49 15.3 83 6 2 8 2 3 1 0  
7 2.19 3.27 63.7 -1.23 -0.27 17.8 84 5 4 7 5 2 1 0  
8 1.74 2.34 76.3 -1.83 -0.49 22.0 82 6 6 6 4 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer