PDBsum entry 1em8 Go to PDB code:  Tunnel analysis for: 1em8 calculated with MOLE 2.0 PDB id 1em8 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.28 1.31 17.5 -0.22 -0.13 9.5 82 2 1 1 4 2 0 0   2 1.22 1.22 18.4 -0.97 -0.36 14.9 78 1 1 2 2 2 1 0   3 1.35 1.42 15.8 -1.36 -0.62 18.3 83 2 2 1 1 0 0 0   4 1.34 1.40 18.3 -1.36 -0.46 17.5 72 2 2 1 1 2 0 0   5 1.20 2.10 15.3 0.86 0.01 5.7 78 0 1 0 6 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.