PDBsum entry 1ef1 Go to PDB code:  Tunnel analysis for: 1ef1 calculated with MOLE 2.0 PDB id 1ef1 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.24 1.38 39.3 -1.44 -0.44 17.1 81 4 2 4 4 1 2 0  MSE 549 C 2 1.24 1.37 40.7 -1.92 -0.44 15.0 82 5 1 6 2 2 1 0   3 1.25 1.38 56.8 -2.09 -0.56 21.5 79 6 6 5 3 2 1 0  MSE 577 D 4 1.17 3.27 16.6 2.67 1.23 4.6 69 1 0 0 6 4 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.