PDBsum entry 1e96

Tunnel analysis for: 1e96 calculated with

MOLE 2.0

PDB id

1e96

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.18

2.87

23.9

-0.17

0.05

14.4

79

3

1

2

6

2

0

0

2

1.94

3.32

24.8

-0.26

0.02

17.1

86

1

3

2

6

1

1

0

3

1.19

2.78

26.2

0.12

0.09

12.4

75

3

1

2

6

4

0

0

4

1.19

1.25

27.2

-0.11

0.06

16.3

82

1

3

2

6

3

1

0

5

1.64

1.97

30.7

-0.87

-0.15

14.3

82

2

2

2

3

1

1

1

GTP 200 A

6

1.19

1.25

33.0

-0.68

-0.09

13.7

78

2

2

2

3

3

1

1

GTP 200 A

7

1.91

3.26

35.7

-1.79

-0.50

22.5

85

3

3

3

3

1

1

0

8

1.19

1.25

38.1

-1.58

-0.43

21.5

82

3

3

3

3

3

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.