PDBsum entry 1e4v

Tunnel analysis for: 1e4v calculated with

MOLE 2.0

PDB id

1e4v

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

2 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.39

1.65

25.1

0.40

0.08

11.7

84

2

1

1

5

1

0

0

AP5 215 A

2

1.38

1.38

26.8

-1.53

-0.28

25.3

82

5

2

1

2

1

0

0

AP5 215 A

3

1.10

1.60

26.9

-0.81

-0.16

13.0

76

2

2

0

3

1

1

0

4

1.64

1.71

32.3

-1.90

-0.37

27.3

81

6

2

0

4

1

1

0

AP5 215 A

5

1.18

1.18

32.3

-2.21

-0.53

23.4

81

7

3

3

2

1

1

0

AP5 215 A

6

1.65

1.68

38.5

-1.51

-0.25

23.2

78

7

1

0

4

2

1

0

AP5 215 A

7

1.77

1.98

17.9

-2.15

-0.47

21.6

82

1

2

2

1

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.