spacer
spacer

PDBsum entry 1e3p

Go to PDB code: 
Top Page protein ligands pores links
Pore analysis for: 1e3p calculated with MOLE 2.0 PDB id
1e3p
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
8 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.23 4.99 29.6 -1.74 -0.33 28.8 81 6 5 1 3 2 0 0  SO4 906 A
2 1.89 2.13 30.6 -1.60 -0.31 33.8 80 6 6 2 4 0 1 0  SO4 908 A
3 1.19 2.09 33.9 0.13 0.00 15.3 83 2 4 2 6 1 0 0  
4 1.89 2.09 47.8 -2.47 -0.45 35.2 77 11 9 1 6 2 1 0  SO4 906 A SO4 907 A
5 1.89 2.13 56.2 -2.27 -0.44 34.1 80 12 9 3 6 2 1 0  SO4 906 A SO4 907 A
6 1.90 2.09 70.3 -2.30 -0.41 36.6 79 14 14 2 7 1 1 0  SO4 907 A SO4 908 A
7 1.87 1.94 72.8 -1.90 -0.43 29.3 83 12 11 5 7 1 1 0  SO4 907 A
8 1.21 4.31 40.3 1.67 0.44 7.4 77 1 2 0 14 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer