 |
PDBsum entry 1e1r
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 1e1r calculated with MOLE 2.0
|
PDB id
|
|
|
|
1e1r
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
26 pores,
coloured by radius |
 |
22 pores,
coloured by radius
|
22 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.42 |
1.52 |
44.5 |
-1.73 |
-0.45 |
26.3 |
78 |
 |
6 |
4 |
1 |
4 |
1 |
1 |
0 |
 |
|
 |
 |
2 |
 |
1.64 |
1.95 |
45.2 |
-1.12 |
-0.26 |
19.9 |
73 |
3 |
6 |
0 |
5 |
3 |
1 |
0 |
|
 |
3 |
 |
1.29 |
1.37 |
59.4 |
-0.96 |
-0.42 |
13.0 |
75 |
3 |
4 |
1 |
6 |
3 |
6 |
0 |
|
 |
4 |
 |
1.33 |
1.36 |
79.5 |
-0.89 |
-0.20 |
22.4 |
85 |
8 |
9 |
4 |
10 |
2 |
1 |
0 |
ADP 600 D
|
 |
5 |
 |
1.34 |
1.57 |
81.0 |
-1.37 |
-0.26 |
22.6 |
83 |
5 |
6 |
7 |
6 |
2 |
0 |
0 |
PO4 602 E
|
 |
6 |
 |
2.73 |
4.59 |
91.4 |
-2.39 |
-0.60 |
33.0 |
84 |
10 |
11 |
6 |
5 |
0 |
1 |
0 |
|
 |
7 |
 |
1.55 |
1.70 |
93.7 |
-1.42 |
-0.53 |
22.3 |
86 |
7 |
10 |
5 |
9 |
0 |
3 |
0 |
|
 |
8 |
 |
1.63 |
1.82 |
98.0 |
-1.47 |
-0.50 |
22.1 |
86 |
10 |
12 |
4 |
10 |
0 |
4 |
0 |
|
 |
9 |
 |
1.31 |
1.31 |
125.6 |
-1.17 |
-0.38 |
16.5 |
80 |
7 |
10 |
7 |
9 |
7 |
3 |
0 |
PO4 602 E
|
 |
10 |
 |
1.27 |
1.27 |
126.0 |
-1.49 |
-0.38 |
20.4 |
78 |
10 |
10 |
6 |
8 |
7 |
4 |
0 |
|
 |
11 |
 |
1.47 |
1.47 |
127.2 |
-1.63 |
-0.50 |
24.7 |
81 |
11 |
14 |
3 |
10 |
3 |
2 |
0 |
|
 |
12 |
 |
1.31 |
3.21 |
124.5 |
-1.56 |
-0.46 |
26.2 |
84 |
10 |
10 |
5 |
9 |
1 |
0 |
0 |
|
 |
13 |
 |
2.02 |
2.99 |
128.7 |
-1.03 |
-0.29 |
20.8 |
82 |
6 |
8 |
4 |
9 |
3 |
0 |
0 |
ANP 600 F
|
 |
14 |
 |
1.48 |
1.51 |
131.5 |
-1.78 |
-0.51 |
25.9 |
82 |
14 |
16 |
2 |
11 |
3 |
3 |
0 |
|
 |
15 |
 |
1.44 |
1.60 |
134.1 |
-0.77 |
-0.25 |
17.2 |
79 |
8 |
10 |
3 |
16 |
8 |
2 |
0 |
PO4 602 E
|
 |
16 |
 |
1.57 |
3.13 |
130.4 |
-2.15 |
-0.43 |
29.2 |
84 |
13 |
15 |
10 |
8 |
2 |
1 |
0 |
|
 |
17 |
 |
1.41 |
1.57 |
148.2 |
-1.68 |
-0.36 |
26.4 |
83 |
9 |
16 |
8 |
11 |
4 |
1 |
0 |
PO4 602 E
|
 |
18 |
 |
1.76 |
3.02 |
156.9 |
-1.83 |
-0.68 |
25.3 |
83 |
8 |
14 |
11 |
5 |
1 |
2 |
1 |
|
 |
19 |
 |
1.54 |
1.75 |
167.5 |
-1.17 |
-0.36 |
20.8 |
84 |
13 |
18 |
8 |
17 |
3 |
4 |
0 |
|
 |
20 |
 |
2.15 |
3.01 |
163.5 |
-1.29 |
-0.34 |
22.0 |
84 |
12 |
11 |
8 |
14 |
3 |
1 |
0 |
ANP 600 F
|
 |
21 |
 |
1.45 |
1.45 |
184.9 |
-1.36 |
-0.38 |
22.0 |
80 |
13 |
20 |
6 |
15 |
6 |
3 |
0 |
|
 |
22 |
 |
1.23 |
1.23 |
200.6 |
-1.40 |
-0.39 |
19.8 |
79 |
13 |
19 |
8 |
12 |
9 |
5 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |