spacer
spacer

PDBsum entry 1dvr

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 1dvr calculated with MOLE 2.0 PDB id
1dvr
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.68 1.68 26.0 -1.63 -0.33 22.1 83 6 1 2 1 1 2 0  ATF 230 B
2 2.12 2.72 37.1 -1.98 -0.47 26.8 88 7 2 3 3 1 1 0  ATF 230 B
3 1.52 1.76 40.8 -2.07 -0.37 26.0 84 6 5 3 4 1 2 0  ATF 230 B
4 1.52 1.76 43.2 -2.04 -0.38 28.6 87 7 4 5 3 1 2 0  ATF 230 B
5 1.43 1.41 47.2 -1.19 -0.44 20.5 86 6 5 2 4 0 0 0  ATF 230 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer