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PDBsum entry 1dug

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 1dug calculated with MOLE 2.0 PDB id
1dug
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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14 tunnels, coloured by tunnel radius 12 tunnels, coloured by tunnel radius 12 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.03 6.9 0.82 0.39 16.9 75 2 1 0 3 0 0 0  
2 1.43 10.9 -2.31 -0.17 38.2 79 4 1 0 2 0 0 0  
3 1.37 13.6 0.02 0.26 20.0 75 2 0 1 3 0 0 0  
4 2.12 8.3 -1.08 -0.34 16.6 71 0 2 1 1 1 1 0  
5 2.07 8.8 -0.99 -0.38 13.5 74 1 1 1 1 1 1 0  
6 2.40 4.7 -1.60 -0.20 15.7 73 1 2 1 1 1 1 0  
7 2.03 4.7 -2.51 -0.41 28.1 75 2 2 1 1 1 0 0  
8 2.40 5.2 -1.55 -0.23 16.0 73 1 2 1 1 1 1 0  
9 1.55 9.9 -1.50 -0.11 12.8 62 0 2 0 0 2 3 0  
10 1.51 14.6 -1.53 -0.14 18.9 62 1 2 0 0 3 3 0  
11 1.67 9.0 -1.72 -0.37 33.6 76 2 3 0 2 0 0 0  
12 1.60 5.0 -3.11 -0.44 45.8 81 2 2 0 0 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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