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PDBsum entry 1dr9

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Immune system PDB id
1dr9
Contents
Protein chain
200 a.a. *
Ligands
NAG ×3
* Residue conservation analysis

References listed in PDB file
Key reference
Title Structure and dimerization of a soluble form of b7-1.
Authors S.Ikemizu, R.J.Gilbert, J.A.Fennelly, A.V.Collins, K.Harlos, E.Y.Jones, D.I.Stuart, S.J.Davis.
Ref. Immunity, 2000, 12, 51-60. [DOI no: 10.1016/S1074-7613(00)80158-2]
PubMed id 10661405
Abstract
B7-1 (CD80) and B7-2 (CD86) are glycoproteins expressed on antigen-presenting cells. The binding of these molecules to the T cell homodimers CD28 and CTLA-4 (CD152) generates costimulatory and inhibitory signals in T cells, respectively. The crystal structure of the extracellular region of B7-1 (sB7-1), solved to 3 A resolution, consists of a novel combination of two Ig-like domains, one characteristic of adhesion molecules and the other previously seen only in antigen receptors. In the crystal lattice, sB7-1 unexpectedly forms parallel, 2-fold rotationally symmetric homodimers. Analytical ultracentrifugation reveals that sB7-1 also dimerizes in solution. The structural data suggest a mechanism whereby the avidity-enhanced binding of B7-1 and CTLA-4 homodimers, along with the relatively high affinity of these interactions, favors the formation of very stable inhibitory signaling complexes.
Figure 4.
Figure 4. Structure of the sB7-1 Homodimer Observed in the Crystal Lattice(A) Two orthogonal views of the GRASP surface of the homodimer showing the location of residues whose mutation to alanine disrupts (magenta) or has no effect (cyan) on binding. Putative N-glycosylation sites are colored green.(B) The GRASP surfaces of amino acids involved in forming the dimer are colored red. The view is identical to the right-hand panel in (A) but with the front copy of sB7-1 removed.(C) Details of the residues at the dimer interface are shown in ball-and-stick format viewed as in the left-hand panel of (A).(D) The homodimer is shown with either oligomannose, bi-, or triantennary N-glycans modeled at each of the potential glycosylation sites.
Figure 6.
Figure 6. Evolutionary Relationships of the IgSF Constant-like DomainsThe parts of the lineage colored blue are proposed to have generated cell adhesion and cell–cell recognition molecules, whereas the red section produced components of the adaptive immune response. CD2 is used to represent the C2/I-set.
The above figures are reprinted by permission from Cell Press: Immunity (2000, 12, 51-60) copyright 2000.
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