PDBsum entry 1do0 Go to PDB code:  Pore analysis for: 1do0 calculated with MOLE 2.0 PDB id 1do0 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   29 pores, coloured by radius 29 pores, coloured by radius 29 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.58 1.57 25.8 -1.32 -0.26 30.4 82 2 4 0 4 0 0 0   2 1.24 2.26 31.4 0.19 0.20 19.5 80 4 5 1 6 0 0 0   3 1.87 1.95 45.8 -2.22 -0.50 28.9 86 6 6 4 2 0 0 0   4 1.88 3.48 58.6 -2.45 -0.49 30.2 77 10 6 3 4 0 2 0   5 1.91 3.46 59.4 -2.36 -0.33 32.5 82 11 6 2 7 0 1 0   6 1.67 3.21 61.3 -1.61 -0.54 22.1 84 6 6 3 6 0 3 0  SO4 800 C 7 1.90 3.46 71.3 -1.86 -0.39 27.5 76 7 6 0 4 0 3 0   8 1.40 2.78 77.3 -2.10 -0.46 30.8 85 7 9 5 5 0 0 0   9 1.60 1.71 81.7 -1.43 -0.23 23.3 87 11 4 7 10 0 1 0   10 2.09 3.37 88.4 -2.23 -0.39 29.0 80 14 9 6 6 0 1 0   11 1.99 2.18 101.0 -1.88 -0.31 27.8 80 11 9 3 6 0 2 0   12 1.87 1.94 105.0 -2.23 -0.43 28.3 86 11 11 8 4 0 0 0   13 1.91 1.99 108.7 -2.19 -0.58 27.2 86 11 13 7 4 0 2 0  SO4 800 C 14 2.06 3.06 108.5 -2.55 -0.50 32.5 86 20 11 8 7 0 0 0  MG 605 E ATP 915 E 15 1.83 1.98 108.2 -1.83 -0.39 25.9 85 10 8 5 9 0 1 0   16 1.70 1.71 114.7 -1.84 -0.46 27.7 86 13 11 5 3 0 1 0  ATP 910 D 17 1.34 1.42 115.7 -0.94 -0.29 18.1 84 8 4 6 4 0 2 1   18 1.98 2.95 117.7 -2.39 -0.52 31.1 85 16 12 4 7 0 1 0  MG 605 E ATP 915 E 19 2.12 2.88 118.8 -2.13 -0.54 24.3 85 13 12 7 7 0 2 0  SO4 800 C 20 1.45 2.82 121.8 -1.87 -0.40 29.2 82 13 9 2 12 0 2 0   21 1.47 2.81 131.8 -2.17 -0.45 29.9 80 16 11 5 10 0 2 0   22 1.56 2.84 144.4 -1.91 -0.41 29.3 80 13 11 2 10 0 3 0   23 2.01 3.60 153.2 -1.98 -0.50 26.4 83 17 12 3 11 0 4 0  SO4 800 C 24 1.91 3.42 155.9 -2.13 -0.42 28.2 80 19 11 5 13 0 3 0   25 1.57 2.94 167.5 -1.18 -0.36 22.2 84 15 12 6 10 1 1 1   26 1.90 3.44 168.5 -1.89 -0.38 27.2 80 16 11 2 13 0 4 0   27 1.23 2.00 186.2 -0.51 -0.19 18.0 86 14 13 6 13 1 0 0   28 1.82 1.83 196.3 -0.90 -0.24 20.8 86 16 9 5 10 1 1 0   29 2.81 3.85 28.1 -2.84 -0.48 23.9 73 4 4 2 0 1 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.