spacer
spacer

PDBsum entry 1dmy

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) links
Tunnel analysis for: 1dmy calculated with MOLE 2.0 PDB id
1dmy
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.55 10.0 -0.48 0.23 15.0 82 2 0 2 2 2 1 0  900 AZM B
2 2.56 15.7 -0.55 0.17 12.3 79 2 0 2 2 3 0 0  900 AZM B
3 1.58 3.0 0.58 0.43 12.0 85 1 0 1 4 0 0 0  
4 1.47 7.5 0.00 -0.19 5.7 80 0 1 2 3 0 1 0  
5 2.54 4.2 -0.59 0.40 1.9 59 0 0 0 1 2 0 0  
6 2.49 5.0 -0.47 0.12 2.0 59 0 0 0 1 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer