spacer
spacer

PDBsum entry 1djz

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1djz calculated with MOLE 2.0 PDB id
1djz
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.23 1.75 18.2 -0.36 0.49 14.4 71 3 2 0 3 4 0 0  
2 1.70 1.93 17.0 -1.36 -0.20 11.5 76 1 0 3 3 2 0 0  
3 1.36 1.36 18.7 -0.43 -0.19 9.0 73 2 2 2 4 1 1 0  
4 1.83 1.83 15.4 -0.92 -0.47 11.2 88 1 1 2 2 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer