PDBsum entry 1djs Go to PDB code:  Tunnel analysis for: 1djs calculated with MOLE 2.0 PDB id 1djs Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.43 1.43 15.9 -0.10 -0.28 10.4 72 2 1 0 3 2 0 0  MSE 218 A 2 1.41 1.41 17.2 -0.10 -0.28 10.2 78 1 1 1 3 2 0 0  MSE 218 A 3 1.36 2.67 18.3 -0.36 0.14 18.4 73 2 1 1 2 3 0 0  MSE 218 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.