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PDBsum entry 1diy

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Tunnel analysis for: 1diy calculated with MOLE 2.0 PDB id
1diy
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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1 tunnel, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.26 1.42 35.4 2.26 0.78 3.0 69 1 0 0 14 2 0 1  ACD 700 A BOG 751 A
2 1.31 1.46 46.9 1.22 0.28 2.7 77 2 0 4 12 4 0 1  ACD 700 A
3 1.33 1.49 58.8 1.28 0.33 2.3 71 2 0 2 15 7 1 1  ACD 700 A
4 1.95 2.53 17.0 0.15 0.32 11.3 74 2 0 1 6 3 0 0  COH 601 A
5 2.33 2.56 20.0 -1.07 -0.02 20.7 84 4 1 2 3 3 0 0  COH 601 A
6 1.15 1.15 18.3 -0.41 -0.28 2.4 81 0 0 2 1 2 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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