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PDBsum entry 1dim

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Top Page protein ligands metals tunnels links
Tunnel analysis for: 1dim calculated with MOLE 2.0 PDB id
1dim
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.10 1.50 26.1 -1.45 0.12 15.3 78 2 4 3 3 5 0 0  EQP 1 A K 690 A
2 1.34 1.37 19.8 -0.59 -0.25 14.0 82 2 0 1 3 2 0 0  
3 1.35 1.45 15.7 -0.24 -0.16 15.3 82 2 2 0 4 1 0 0  
4 1.35 1.51 15.4 -0.99 -0.56 10.0 76 2 1 1 1 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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