PDBsum entry 1dh3 Go to PDB code:  Tunnel analysis for: 1dh3 calculated with MOLE 2.0 PDB id 1dh3 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.44 1.68 15.7 -3.48 -0.55 25.7 95 1 0 1 1 0 0 0  DC 3 B DA 4 B DG 5 B DC -5 D DT -4 D 2 1.42 1.68 16.0 -2.71 -0.59 23.2 89 2 0 1 1 0 0 0  DG 10 B DG -7 D DG -6 D DC -5 D DT -4 D 3 1.55 1.73 17.5 -2.30 -0.63 20.1 95 1 0 1 1 0 0 0  DT -8 D DG -7 D DG -6 D DC -5 D DT -4 D 4 1.32 1.32 19.1 -1.42 -0.46 13.6 82 2 0 1 2 0 0 0  DT 2 B DC 3 B DA 4 B DG -6 D DC -5 D 5 1.34 1.34 21.2 -1.47 -0.44 13.8 82 2 0 1 2 0 0 0  DT 2 B DC 3 B DA 4 B DG -6 D DC -5 D 6 1.32 1.32 25.7 -2.10 -0.41 21.1 78 2 0 1 1 0 0 0  DT 2 B DC 3 B DA 4 B DG 10 B DG -7 D DG -6 D DC - 5 D 7 1.32 1.32 27.8 -2.12 -0.41 20.8 78 2 0 1 1 0 0 0  DT 2 B DC 3 B DA 4 B DG 10 B DG -7 D DG -6 D DC - 5 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.