PDBsum entry 1df0

Pore analysis for: 1df0 calculated with

MOLE 2.0

PDB id

1df0

Pores calculated on whole structure

Pores calculated excluding ligands

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11 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.69

3.32

25.4

-3.10

-0.69

36.5

80

5

5

1

0

0

1

0

2

3.84

4.05

28.5

-1.27

-0.06

23.0

84

5

3

2

4

1

0

0

3

3.05

4.74

34.6

-2.71

-0.50

34.4

78

4

7

4

2

2

0

0

4

1.39

1.39

37.2

-0.40

-0.24

13.8

83

1

7

4

3

3

0

0

5

3.06

3.93

38.5

-2.40

-0.46

28.7

80

5

6

4

4

2

0

0

6

1.70

1.95

39.3

-1.05

0.00

23.2

83

5

4

1

6

2

0

0

7

1.57

3.12

52.6

-2.26

-0.59

30.2

84

6

6

2

4

0

0

0

8

1.69

3.08

55.5

-2.49

-0.70

31.2

86

8

6

2

3

0

0

0

9

1.69

1.82

60.2

-0.37

-0.13

12.8

82

3

3

5

7

4

0

0

10

1.36

1.39

65.1

-0.80

-0.22

20.1

87

5

6

5

8

3

0

0

11

1.19

1.44

82.7

-2.11

-0.58

28.5

85

6

9

5

6

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.