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PDBsum entry 1ddx

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 1ddx calculated with MOLE 2.0 PDB id
1ddx
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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16 tunnels, coloured by tunnel radius 24 tunnels, coloured by tunnel radius 24 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.27 36.7 -1.04 -0.16 15.2 75 4 1 2 4 3 3 0  
2 1.27 36.8 -1.23 -0.21 16.4 76 4 1 2 4 3 2 0  
3 1.29 39.5 0.66 0.14 6.5 76 2 1 4 7 3 2 0  671 NAG A
4 1.29 39.6 0.50 0.08 7.3 77 2 1 4 7 3 1 0  671 NAG A
5 1.28 42.4 0.35 0.10 7.7 79 2 1 5 6 3 2 0  3671 NAG D
6 1.27 43.4 -0.60 -0.10 10.7 75 3 3 4 5 4 2 2  
7 1.27 43.6 -0.75 -0.15 11.3 76 3 3 4 5 4 1 2  
8 1.27 44.8 -0.80 -0.09 15.3 76 3 5 1 5 4 3 0  
9 1.27 44.9 -0.95 -0.15 16.7 77 3 5 1 5 4 2 0  
10 1.26 45.2 -0.47 -0.17 10.0 76 3 3 3 6 3 3 2  
11 1.26 45.4 -0.63 -0.22 10.8 76 3 3 3 6 3 2 2  
12 1.26 51.9 -1.08 -0.21 17.4 77 5 2 3 5 3 3 0  1702 BOG B
13 1.26 52.1 -1.26 -0.25 18.5 78 5 2 3 5 3 2 0  1702 BOG B
14 1.58 55.8 0.80 0.18 4.9 79 3 1 4 11 8 1 0  3701 PGX D
15 1.58 55.4 0.93 0.23 4.8 81 3 1 4 11 7 1 0  1701 PGX B
16 1.57 55.5 0.82 0.19 5.4 82 3 1 4 11 7 0 0  1701 PGX B
17 1.58 59.2 0.72 0.49 4.4 76 4 0 3 14 9 1 0  3701 PGX D
18 1.56 59.6 0.91 0.56 4.3 76 4 0 3 14 9 1 0  1701 PGX B
19 1.56 59.8 0.76 0.46 4.7 77 4 0 3 14 9 0 0  1701 PGX B
20 1.27 62.5 -1.69 -0.35 15.4 76 5 2 6 3 4 3 0  
21 1.27 62.6 -1.80 -0.42 15.2 77 5 2 6 3 4 2 0  
22 1.41 10.0 -0.12 -0.38 4.4 82 1 0 1 4 0 0 0  
23 1.40 9.9 -0.26 -0.34 6.3 82 1 0 1 4 0 0 0  
24 1.27 10.1 -0.74 -0.53 6.3 84 1 1 2 0 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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