PDBsum entry 1d5t Go to PDB code:  Tunnel analysis for: 1d5t calculated with MOLE 2.0 PDB id 1d5t Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 2.05 17.4 1.49 0.18 1.8 85 0 1 2 5 1 0 0   2 1.18 2.03 34.3 0.76 -0.11 4.0 90 0 1 3 6 1 0 0   3 1.21 1.82 16.7 0.97 0.85 3.7 83 1 0 1 7 2 0 0   4 1.12 1.21 18.4 1.47 0.92 3.9 82 1 0 0 7 2 0 0   5 1.13 1.21 18.4 -1.29 0.01 24.8 74 2 1 0 2 2 0 0   6 1.13 1.21 27.6 0.58 0.67 11.8 81 2 1 0 7 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.