PDBsum entry 1d5f Go to PDB code:  Pore analysis for: 1d5f calculated with MOLE 2.0 PDB id 1d5f Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.44 1.68 45.4 -1.67 -0.54 19.1 84 5 5 6 5 0 0 0   2 1.65 2.87 49.0 -1.24 -0.36 20.3 80 7 6 4 4 0 0 1   3 1.51 1.77 52.7 -1.62 -0.53 20.0 82 6 5 6 5 0 0 0   4 1.47 1.55 57.3 -1.78 -0.45 22.9 81 9 7 5 3 1 0 1   5 1.55 1.68 59.2 -0.90 -0.25 9.0 77 2 3 3 5 3 2 0   6 1.70 1.69 60.7 -1.76 -0.58 19.0 84 5 7 8 4 1 0 0   7 1.66 1.79 69.2 -1.88 -0.52 24.3 81 8 6 5 4 1 0 1   8 1.86 2.09 76.6 -2.42 -0.71 27.7 75 4 8 4 1 2 1 0   9 1.69 1.96 83.0 -1.46 -0.50 18.2 78 5 7 4 3 2 0 1   10 1.50 1.67 120.4 -1.66 -0.53 20.6 82 11 13 9 7 2 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.