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PDBsum entry 1cx0

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Top Page protein dna_rna metals tunnels links
Tunnel analysis for: 1cx0 calculated with MOLE 2.0 PDB id
1cx0
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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3 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.97 1.97 19.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 101 B G 102 B C 103 B C 104 B U 120 B G 128 B G
129 B C 130 B G 131 B C 163 B A 165 B A 166 B MG
405 B
2 1.93 1.93 27.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 101 B G 102 B C 103 B U 120 B G 128 B G 129 B C
130 B G 131 B C 132 B C 133 B C 163 B A 165 B A
166 B U 167 B
3 1.97 1.97 28.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 101 B G 102 B C 103 B U 120 B G 128 B G 129 B C
133 B G 134 B G 135 B C 163 B G 164 B A 165 B A
166 B
4 1.96 1.96 28.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 101 B G 102 B C 103 B U 120 B G 128 B G 129 B G
134 B G 135 B C 163 B G 164 B A 165 B A 166 B
5 1.41 1.41 21.5 1.33 0.50 3.7 75 1 0 2 5 5 0 0  MSE 72 A MSE 82 A
6 1.22 1.40 26.8 -1.12 -0.34 17.5 75 3 0 1 3 1 0 0  C 146 B C 147 B A 148 B U 149 B
7 1.21 1.40 27.7 -1.18 -0.44 16.4 75 3 1 1 3 1 0 0  A 142 B A 143 B C 156 B C 157 B
8 1.22 1.41 28.1 -1.41 -0.44 19.2 75 3 1 1 3 1 0 0  C 144 B A 145 B C 146 B
9 1.22 1.40 33.1 -0.73 -0.48 11.4 75 2 0 1 3 1 0 0  C 141 B A 142 B A 143 B C 157 B G 158 B G 159 B

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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