PDBsum entry 1cql Go to PDB code:  Tunnel analysis for: 1cql calculated with MOLE 2.0 PDB id 1cql Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 tunnels, coloured by tunnel radius 10 tunnels, coloured by tunnel radius 10 tunnels, coloured as in list below Tunnels Length Hydropathy Hydrophobicity Polarity Mutability Residue..type Ligands Radius 1 2.55 13.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  3 C A,4 G A,5 U A,6 U A,7 U A,8 A A,9 C A,34 C A, 35 C A,36 A A,37 A A,38 G A 2 2.39 14.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  2 G A,3 C A,5 U A,6 U A,7 U A,8 A A,9 C A,35 C A, 36 A A,37 A A,38 G A 3 2.58 16.4 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  4 G A,5 U A,6 U A,7 U A,8 A A,9 C A,33 G A,34 C A, 35 C A,36 A A,37 A A,38 G A 4 1.54 16.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  1 G A,6 U A,7 U A,8 A A,9 C A,37 A A,38 G A,39 G A,40 C A 5 2.56 16.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  5 U A,6 U A,7 U A,8 A A,9 C A,33 G A,34 C A,35 C A,36 A A,37 A A,38 G A 6 2.54 17.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  6 U A,7 U A,8 A A,9 C A,32 A A,33 G A,36 A A,37 A A,38 G A 7 2.50 32.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  6 U A,7 U A,8 A A,9 C A,12 G A,13 G A,14 U A,15 C A,30 G A,31 C A,32 A A,33 G A,36 A A,37 A A,38 G A 8 2.49 11.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  16 A A,17 G A,18 G A,19 U A,26 G A,28 A A 9 1.97 11.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  16 A A,17 G A,18 G A,19 U A,25 A A,28 A A 10 1.57 3.4 0.00 0.00 0.0 0 0 0 0 0 0 0 0  11 A A,12 G A,13 G A,14 U A,35 C A,36 A A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.