spacer
spacer

PDBsum entry 1cpu

Go to PDB code: 
Top Page protein ligands metals tunnels links
Tunnel analysis for: 1cpu calculated with MOLE 2.0 PDB id
1cpu
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
8 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.48 9.4 -0.26 -0.30 8.9 75 1 0 0 1 1 0 0  1 PCA A
2 1.48 16.8 -0.44 -0.26 15.4 77 2 1 0 2 0 0 0  1 PCA A
3 3.27 8.3 -0.78 -0.29 16.4 93 2 2 2 2 0 1 0  
4 1.38 13.7 -0.25 -0.23 12.4 88 2 2 2 2 0 1 1  
5 1.72 14.2 -0.73 -0.26 5.9 72 1 1 1 1 2 1 0  
6 1.69 10.4 -1.36 -0.28 17.5 77 1 4 2 1 1 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer