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PDBsum entry 1clk

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Tunnel analysis for: 1clk calculated with MOLE 2.0 PDB id
1clk
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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4 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.35 1.35 43.1 -0.35 0.22 13.0 68 3 3 0 5 5 3 0  
2 1.42 1.43 45.5 -0.44 0.20 13.1 72 4 3 0 7 5 2 0  
3 1.34 1.33 46.5 -0.18 0.27 11.5 71 4 2 0 6 6 1 0  
4 1.39 1.40 48.8 -0.25 0.26 12.1 73 5 2 0 7 6 0 0  
5 1.20 1.47 53.1 -0.97 0.06 18.7 71 4 6 0 6 7 1 0  
6 1.20 1.43 55.5 -1.00 0.08 18.6 73 4 6 0 7 7 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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