spacer
spacer

PDBsum entry 1c1y

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 1c1y calculated with MOLE 2.0 PDB id
1c1y
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
22 tunnels, coloured by tunnel radius 25 tunnels, coloured by tunnel radius 25 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 2.01 15.6 -1.15 0.04 26.4 79 3 2 0 2 1 0 0  
2 2.01 15.6 -1.15 0.04 26.4 79 3 2 0 2 1 0 0  
3 1.55 15.8 -1.56 -0.14 29.0 80 3 2 0 2 1 0 0  
4 2.04 16.5 -0.55 -0.06 18.1 85 3 3 1 2 1 0 0  
5 2.04 16.5 -0.55 -0.06 18.1 85 3 3 1 2 1 0 0  
6 1.48 16.8 -1.09 -0.26 22.5 86 3 3 1 2 1 0 0  
7 2.04 17.0 -1.25 -0.05 28.2 84 3 2 0 3 1 0 0  
8 1.49 17.2 -1.72 -0.25 30.2 85 3 2 0 3 1 0 0  
9 1.96 22.8 -0.49 -0.25 10.2 80 2 3 1 4 3 0 0  170 GTP A
10 2.01 22.8 -0.48 -0.08 14.0 77 3 2 1 4 3 0 0  170 GTP A
11 1.96 24.2 -0.52 -0.16 13.5 80 3 2 1 5 3 0 0  170 GTP A
12 1.76 25.6 -0.87 -0.26 7.6 85 1 2 1 3 2 1 0  170 GTP A,171 MG A
13 1.75 25.6 -0.83 -0.13 11.0 84 2 2 1 3 2 1 0  170 GTP A,171 MG A
14 2.04 17.0 -1.25 -0.05 28.2 84 3 2 0 3 1 0 0  
15 1.75 27.0 -0.92 -0.21 11.8 87 2 2 1 4 2 1 0  170 GTP A,171 MG A
16 2.38 7.4 -0.94 -0.08 17.4 76 2 1 1 2 1 0 0  
17 2.12 7.6 -2.05 -0.23 31.7 78 2 1 1 1 0 0 0  
18 1.79 8.5 -1.59 -0.26 23.9 79 2 1 2 1 1 0 0  
19 2.03 9.8 -1.56 -0.25 20.2 71 1 2 0 2 1 0 0  
20 1.99 11.0 -0.84 -0.14 19.5 88 1 2 0 3 1 0 0  
21 1.63 21.2 -3.24 -0.54 43.4 77 4 2 1 1 0 0 0  
22 1.63 22.0 -2.76 -0.55 37.7 82 4 2 2 1 0 0 0  
23 1.63 22.1 -2.48 -0.43 34.7 80 4 2 1 2 0 0 0  
24 2.05 6.0 -0.02 0.22 2.0 79 0 0 2 2 1 0 1  
25 1.92 6.4 -0.45 -0.09 5.7 80 0 1 2 2 1 0 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
spacer
spacer