PDBsum entry 1by4 Go to PDB code:  Pore analysis for: 1by4 calculated with MOLE 2.0 PDB id 1by4 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.56 1.56 34.4 -1.23 -0.49 13.6 79 4 0 2 0 1 2 0  DC 1500 E DA 1501 E DA 1502 E DT 1537 F DA 1541 F DC 1542 F DC 1543 F 2 1.55 1.66 81.2 -1.93 -0.68 18.8 83 11 3 5 1 0 0 0  DG 1497 E DG 1498 E DT 1499 E DC 1500 E DG 1504 E DG 1505 E DT 1506 E DT 1537 F DT 1538 F DT 1539 F 3 1.90 2.09 132.8 -1.29 -0.77 11.3 80 7 1 5 0 0 0 0  DA 1508 E DG 1509 E DG 1533 F DA 1534 F DC 1535 F DC 2494 G DT 2495 G DA 2496 G DG 2497 G DG 2498 G DT 2499 G DC 2500 G DA 2501 G DA 2502 G DA 2541 H DC 2542 H DC 2543 H DT 2544 H DA 2545 H Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.