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Ligand clusters for UniProt code P00875

Ligand clusters for P00875: Ribulose bisphosphate carboxylase large chain OS=Spinacia oleracea GN=rbcL PE=1 SV=1

2 ligand clusters
Cluster 1.
6 ligand types
17 ligands
Cluster 2.
3 ligand types
3 ligands
Representative protein: 1rboL  
 

Structures

PDB   Schematic diagram
1rboL    
1rcxL    
1ir1A    
1upmB    
1uppA    
 more ...

 

 Cluster 1 contains 6 ligand types

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Ligand Description


 
1. Ligand: 3PG × 2
3-Phosphoglyceric acid
PDB codes: 1aa1(L),


 
2. Ligand: RUB × 2
Ribulose-1,5-Diphosphate
PDB codes: 1rcx(L), 1rxo(L).


 
3. Ligand: XDP × 1
D-Xylulose-2,2-Diol-1,5-Bisphosphate
PDB code: 1rco(L).


 
4. Ligand: CAP × 5
2-Carboxyarabinitol-1,5-Diphosphate
PDB codes: 1ir1(A), 1rbo(L), 1upm(B), 1upp(A), 8ruc(A).

_Mg
 
5. Metal: _MG × 4
PDB codes: 1aa1(L), 1aus(L), 1ir1(A), 8ruc(A).

_Ca
 
6. Metal: _CA × 3
PDB codes: 1rxo(L), 1upm(B), 1upp(A).

 

 Cluster 2 contains 3 ligand types

Selection shortcuts: select all/none invert selection.
Ligand Description


 
1. Ligand: RUB × 1
Ribulose-1,5-Diphosphate
PDB code: 1rcx(L).


 
2. Ligand: XDP × 1
D-Xylulose-2,2-Diol-1,5-Bisphosphate
PDB code: 1rco(L).


 
3. Ligand: CAP × 1
2-Carboxyarabinitol-1,5-Diphosphate
PDB code: 1upm(B).

 

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