PDBsum entry 1bui

Pore analysis for: 1bui calculated with

MOLE 2.0

PDB id

1bui

Pores calculated on whole structure

Pores calculated excluding ligands

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9 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.90

1.90

31.0

-0.32

-0.31

7.8

79

5

1

2

1

1

1

1

2

1.50

1.50

40.0

-1.42

-0.53

16.2

67

5

3

3

1

2

2

2

3

2.55

2.60

40.2

-2.25

-0.32

22.5

74

7

3

3

2

2

2

1

0GJ 246 A

4

1.95

2.31

45.8

-1.75

-0.42

18.7

68

5

5

3

1

5

4

1

0GJ 246 A

5

1.97

2.30

46.8

-1.60

-0.27

23.6

70

6

3

0

3

5

2

0

0GJ 246 A

6

1.33

1.34

52.0

-1.21

-0.25

13.8

80

3

4

4

1

5

1

0

7

1.73

1.73

52.9

-1.38

-0.41

20.1

76

7

3

1

5

1

2

1

0GJ 246 A

8

1.39

1.50

53.1

-1.55

-0.49

14.8

78

4

4

4

1

4

4

0

9

1.99

2.30

62.8

-1.07

-0.30

15.1

69

6

2

3

2

7

2

2

0GJ 246 A

10

1.38

1.40

71.7

-1.70

-0.26

20.8

76

7

5

4

4

7

2

0

0GJ 246 A

11

2.70

3.27

71.8

-1.03

-0.22

15.5

79

6

3

5

4

2

3

2

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.