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PDBsum entry 1bji

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Tunnel analysis for: 1bji calculated with MOLE 2.0 PDB id
1bji
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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7 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels
Length
Hydropathy
Hydrophobicity
Polarity
Mutability
Residue..type
Ligands
Radius
1 1.48 20.2 -1.35 -0.54 20.1 88 3 3 3 3 0 0 1  479 DPC A
2 1.46 28.7 -1.45 -0.47 22.9 81 5 4 1 3 1 1 1  479 DPC A
3 1.47 9.7 -1.58 -0.48 23.0 70 1 3 0 2 1 1 0  
4 1.60 10.9 -1.66 -0.71 23.8 77 1 2 0 3 0 1 0  
5 1.53 8.6 -1.55 -0.02 14.4 75 1 1 1 1 1 0 0  
6 1.87 3.6 -0.48 -0.49 9.4 91 1 0 0 2 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program and visualized using Pymol 0.97rc.
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