PDBsum entry 1bj1 Go to PDB code:  Tunnel analysis for: 1bj1 calculated with MOLE 2.0 PDB id 1bj1 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 1.19 19.3 0.13 -0.20 6.0 71 1 0 2 3 2 1 0   2 1.13 1.13 20.8 0.06 -0.26 5.3 71 1 0 2 3 2 1 0   3 1.15 1.15 19.8 -0.46 -0.40 10.7 75 1 3 2 3 1 1 0   4 1.13 1.13 22.2 -0.05 -0.38 5.5 76 1 0 3 3 1 2 0   5 1.78 2.01 17.4 -1.58 0.30 15.1 76 4 1 1 1 4 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.