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PDBsum entry 1bgg

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 1bgg calculated with MOLE 2.0 PDB id
1bgg
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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7 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.76 4.54 15.9 -1.86 0.20 25.5 63 2 4 1 2 4 0 1  GCO 500 C
2 1.52 1.59 20.5 -0.20 0.15 2.9 75 1 0 3 4 3 1 1  
3 1.54 1.60 20.8 -0.11 0.20 2.9 75 1 0 3 4 3 1 1  
4 1.54 1.60 21.0 0.00 0.24 2.8 75 1 0 3 4 3 1 1  
5 1.53 1.59 20.6 -0.15 0.19 2.9 75 1 0 3 4 3 1 1  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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