PDBsum entry 1bfo

Pore analysis for: 1bfo calculated with

MOLE 2.0

PDB id

1bfo

Pores calculated on whole structure

Pores calculated excluding ligands

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15 pores, coloured by radius

15 pores, coloured by radius

15 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

3.66

3.73

26.7

-0.87

-0.50

6.5

85

1

1

2

4

0

3

0

2

2.00

2.05

27.8

-1.78

-0.57

16.9

94

2

2

4

1

0

2

0

3

1.12

1.60

35.0

-0.86

-0.54

4.7

89

0

1

2

2

0

2

0

4

2.27

2.45

35.6

-0.58

-0.52

6.6

91

2

2

5

4

0

2

0

5

4.06

4.18

41.5

-1.26

-0.54

15.1

86

5

3

6

4

0

2

0

6

1.12

1.60

45.6

-0.77

-0.39

8.4

83

2

2

1

6

0

3

0

7

2.42

2.49

49.0

-0.05

-0.41

3.0

85

0

1

7

9

0

3

0

8

2.56

2.56

49.3

0.39

-0.35

3.8

85

0

2

4

6

0

2

0

9

1.73

2.77

51.1

-1.18

-0.60

13.2

93

3

4

5

3

0

2

0

10

2.59

2.90

53.7

-0.18

-0.37

4.4

86

1

1

6

8

0

3

0

11

1.76

2.73

57.1

-1.74

-0.60

21.4

88

6

5

6

3

0

2

0

12

2.30

2.47

58.2

0.29

-0.33

5.1

88

1

3

5

8

0

2

0

13

2.62

3.16

66.2

0.00

-0.29

10.0

84

4

4

6

8

0

2

0

14

2.14

3.02

69.4

-0.52

-0.40

9.3

88

2

3

6

6

0

3

0

15

1.66

2.70

160.0

-1.30

-0.59

16.2

89

9

11

9

5

1

6

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.