PDBsum entry 1b5f Go to PDB code:  Pore analysis for: 1b5f calculated with MOLE 2.0 PDB id 1b5f Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.59 1.62 27.4 -0.84 -0.57 7.4 91 1 3 2 3 0 3 0   2 1.36 1.50 35.5 -2.71 -0.69 28.0 84 5 3 3 1 0 2 0   3 1.57 1.59 37.0 -0.90 -0.55 10.3 91 1 4 2 4 0 3 0   4 2.39 2.60 46.9 -1.46 -0.56 24.8 87 3 8 4 3 1 0 0   5 1.63 4.40 47.9 -2.97 -0.75 34.2 87 3 4 4 1 0 1 0  NAG 1 E FUC 5 E 6 1.38 1.46 51.5 -1.81 -0.65 17.0 84 5 7 3 2 0 4 0   7 1.64 4.41 54.2 -3.02 -0.68 39.6 80 5 6 3 1 0 1 0  NAG 1 E FUC 5 E 8 1.77 2.03 56.2 -0.86 -0.51 15.6 90 4 4 6 5 0 1 0   9 1.58 1.61 61.1 -1.71 -0.66 17.8 86 3 7 4 2 0 2 0  NAG 1 E FUC 5 E 10 1.75 2.03 67.9 -1.37 -0.55 20.0 88 6 6 6 4 0 0 0   11 1.77 2.01 81.2 -1.18 -0.46 19.9 90 4 6 7 8 0 1 0   12 2.41 2.63 85.7 -1.46 -0.46 24.5 89 4 7 5 8 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.