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PDBsum entry 1amy

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Protein chain A PDB id
1amy
Protein chain A highlighted
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Jmol
Motifs
Secondary structure
Wiring diagram
Residue conservation
ProMotif
3 sheets
6 beta alpha beta units
4 beta hairpins
6 beta bulges
15 strands
19 helices
15 helix-helix interacs
35 beta turns
9 gamma turns
Catalytic residues
D179-E204
D179-D233
D179-D289-E204-W206
R177-D179-D289-E204-H288
D179-D289-E204-H92
D179-D289-E204
D179-D289-E227
Active sites
AS
SS
  
Chain (403 residues)

UniProt code: P04063 (AMY2_HORVU)   [Pfam]

structural classification (2 domains) :
Domain Links CATH no.   Class Architecture
1 3.20.20.80 = Alpha Beta Alpha-Beta Barrel
2 2.60.40.1180 = Mainly Beta Sandwich

Key:  
Sec. struc: Helices labelled H1, H2, ... and strands by their sheets A, B, ...
  Helix Strand  
Motifs:   
    beta turn     gamma turn     beta hairpin
CSA annotation:   
    catalytic residue
Residue contacts:   
    to metal
PDB SITE records:   
 AS  SS  AC1  AC2  AC3

Jmol
RasMol

FASTA
file
Domain 1
Topology diagram


Hera


Domain 2
Topology diagram


Hera


  Analysis of sequence's residue conservation
  Related protein sequences in the PDB
  
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